IL_6I7O_400
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6I7O|1|YQ|U|1931
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_400 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1573
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6I7O|1|YQ|C|1918
6I7O|1|YQ|G|1919
6I7O|1|YQ|U|1920
6I7O|1|YQ|A|1921
6I7O|1|YQ|A|1922
6I7O|1|YQ|C|1923
*
6I7O|1|YQ|G|1928
6I7O|1|YQ|G|1929
6I7O|1|YQ|A|1930
6I7O|1|YQ|U|1931
6I7O|1|YQ|A|1932
6I7O|1|YQ|A|1933
6I7O|1|YQ|G|1934
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain 2b
- Small subunit ribosomal RNA; SSU rRNA
- Chain XS
- 60S ribosomal protein L41-B
- Chain XT
- 60S ribosomal protein L43-A
- Chain YF
- 60S ribosomal protein L19-A
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