IL_6I7O_404

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6I7O|1|YQ|U|2159, 6I7O|1|YQ|U|2175, 6I7O|1|YQ|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_404 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1024

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|YQ|C|2156
6I7O|1|YQ|G|2157
6I7O|1|YQ|A|2158
6I7O|1|YQ|U|2159
6I7O|1|YQ|G|2160
6I7O|1|YQ|G|2161
*
6I7O|1|YQ|U|2173
6I7O|1|YQ|G|2174
6I7O|1|YQ|U|2175
6I7O|1|YQ|U|2176
6I7O|1|YQ|G|2177
6I7O|1|YQ|A|2178
6I7O|1|YQ|C|2179
6I7O|1|YQ|G|2180

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain XT

60S ribosomal protein L43-A

Chain XW

60S ribosomal protein L2-A