IL_6I7O_408

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_408 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.1531

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6I7O|1|YQ|U|2211
6I7O|1|YQ|C|2212
6I7O|1|YQ|A|2213
6I7O|1|YQ|A|2214
6I7O|1|YQ|A|2215
6I7O|1|YQ|G|2216
6I7O|1|YQ|U|2217
*
6I7O|1|YQ|A|2228
6I7O|1|YQ|A|2229
6I7O|1|YQ|C|2230
6I7O|1|YQ|C|2231
6I7O|1|YQ|A|2232
6I7O|1|YQ|A|2233
6I7O|1|YQ|G|2234

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XC

60S ribosomal protein L36-A

Chain XP

60S ribosomal protein L42-A

Chain mb

Transfer RNA; tRNA