IL_6I7O_418

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_418 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.1248

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6I7O|1|YQ|C|2666
6I7O|1|YQ|A|2667
6I7O|1|YQ|U|2668
*
6I7O|1|YQ|A|2686
6I7O|1|YQ|G|2687
6I7O|1|YQ|U|2688
6I7O|1|YQ|A|2689
6I7O|1|YQ|G|2690

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XG

60S ribosomal protein L11-B

Chain YI

60S ribosomal protein L5

Chain YJ

60S ribosomal protein L21-A

Chain YR

5S ribosomal RNA; 5S rRNA