IL_6I7O_438

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6I7O|1|YQ|U|3056, 6I7O|1|YQ|U|3058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_438 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1335

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6I7O|1|YQ|U|3054
6I7O|1|YQ|U|3055
6I7O|1|YQ|U|3056
6I7O|1|YQ|U|3057
6I7O|1|YQ|U|3058
6I7O|1|YQ|G|3059
*
6I7O|1|YQ|C|3084
6I7O|1|YQ|G|3085
6I7O|1|YQ|A|3086
6I7O|1|YQ|A|3087
6I7O|1|YQ|G|3088

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XE

60S ribosomal protein L24-A

Chain YA

60S ribosomal protein L3

Chain YC

60S ribosomal protein L31-A