IL_6I7O_444
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|3180, 6I7O|1|YQ|A|3186, 6I7O|1|YQ|U|3207, 6I7O|1|YQ|A|3209
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_444 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.1368
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|YQ|U|3179
6I7O|1|YQ|A|3180
6I7O|1|YQ|C|3181
6I7O|1|YQ|G|3182
6I7O|1|YQ|A|3183
6I7O|1|YQ|A|3184
6I7O|1|YQ|U|3185
6I7O|1|YQ|A|3186
6I7O|1|YQ|A|3187
6I7O|1|YQ|G|3188
*
6I7O|1|YQ|C|3204
6I7O|1|YQ|G|3205
6I7O|1|YQ|C|3206
6I7O|1|YQ|U|3207
6I7O|1|YQ|G|3208
6I7O|1|YQ|A|3209
6I7O|1|YQ|A|3210
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XD
- 60S ribosomal protein L9-A
- Chain XM
- 60S ribosomal protein L14-A
- Chain XU
- 60S ribosomal protein L16-A
- Chain YH
- 60S ribosomal protein L20-A
- Chain YK
- 60S ribosomal protein L33-A
- Chain YM
- 60S ribosomal protein L6-A
Coloring options: