IL_6I7O_452

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

6I7O|1|YQ|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_452 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.1191

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

6I7O|1|YQ|U|3332
6I7O|1|YQ|G|3333
6I7O|1|YQ|U|3334
6I7O|1|YQ|A|3335
6I7O|1|YQ|A|3336
6I7O|1|YQ|G|3337
*
6I7O|1|YQ|C|3367
6I7O|1|YQ|U|3368
6I7O|1|YQ|G|3369
6I7O|1|YQ|A|3370
6I7O|1|YQ|G|3371

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XE

60S ribosomal protein L24-A

Chain YA

60S ribosomal protein L3

Chain YC

60S ribosomal protein L31-A