IL_6I7O_456
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CU*AAG
- Length
- 5 nucleotides
- Bulged bases
- 6I7O|1|YR|A|64
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_456 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.1641
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6I7O|1|YR|C|15
6I7O|1|YR|U|16
*
6I7O|1|YR|A|63
6I7O|1|YR|A|64
6I7O|1|YR|G|65
Current chains
- Chain YR
- 5S ribosomal RNA
Nearby chains
- Chain XG
- 60S ribosomal protein L11-B
- Chain YD
- 60S ribosomal protein L10
- Chain YI
- 60S ribosomal protein L5
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
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