IL_6I7O_461
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 6I7O|1|YR|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_461 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0999
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6I7O|1|YR|A|72
6I7O|1|YR|C|73
6I7O|1|YR|C|74
6I7O|1|YR|G|75
6I7O|1|YR|A|76
6I7O|1|YR|G|77
6I7O|1|YR|U|78
6I7O|1|YR|A|79
6I7O|1|YR|G|80
*
6I7O|1|YR|C|100
6I7O|1|YR|G|101
6I7O|1|YR|A|102
6I7O|1|YR|A|103
6I7O|1|YR|A|104
6I7O|1|YR|C|105
6I7O|1|YR|U|106
Current chains
- Chain YR
- 5S ribosomal RNA
Nearby chains
- Chain YD
- 60S ribosomal protein L10
- Chain YH
- 60S ribosomal protein L20-A
- Chain YJ
- 60S ribosomal protein L21-A
- Chain YO
- 60S ribosomal protein L7-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: