IL_6I7O_463
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_463 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0916
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|YS|A|44
6I7O|1|YS|C|45
6I7O|1|YS|G|46
6I7O|1|YS|C|47
6I7O|1|YS|A|48
6I7O|1|YS|G|49
6I7O|1|YS|C|50
6I7O|1|YS|G|51
6I7O|1|YS|A|52
6I7O|1|YS|A|53
6I7O|1|YS|A|54
6I7O|1|YS|U|55
6I7O|1|YS|G|56
6I7O|1|YS|C|57
6I7O|1|YS|G|58
6I7O|1|YS|A|59
6I7O|1|YS|U|60
6I7O|1|YS|A|61
6I7O|1|YS|C|62
6I7O|1|YS|G|63
6I7O|1|YS|U|64
*
6I7O|1|YS|A|96
6I7O|1|YS|A|97
6I7O|1|YS|U|98
6I7O|1|YS|C|99
6I7O|1|YS|U|100
Current chains
- Chain YS
- 5.8S ribosomal RNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XH
- 60S ribosomal protein L25
- Chain XL
- 60S ribosomal protein L39
- Chain YP
- 60S ribosomal protein L35-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: