IL_6I7O_472

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6I7O|1|2b|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_472 not in the Motif Atlas

Homologous match to IL_8C3A_510

Geometric discrepancy: 0.1712

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

6I7O|1|2b|G|868
6I7O|1|2b|A|869
6I7O|1|2b|C|870
*
6I7O|1|2b|G|957
6I7O|1|2b|U|958
6I7O|1|2b|U|959
6I7O|1|2b|U|960

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Yb

40S ribosomal protein S13

Chain bb

40S ribosomal protein S22-A

Chain fb

40S ribosomal protein S27-A