IL_6I7O_474

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUGCU*GGUUAUC

Length

12 nucleotides

Bulged bases

6I7O|1|2b|U|1370, 6I7O|1|2b|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_474 not in the Motif Atlas

Geometric match to IL_8DP3_002

Geometric discrepancy: 0.3594

The information below is about IL_8DP3_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6I7O|1|2b|G|1352
6I7O|1|2b|U|1353
6I7O|1|2b|G|1354
6I7O|1|2b|C|1355
6I7O|1|2b|U|1356
*
6I7O|1|2b|G|1367
6I7O|1|2b|G|1368
6I7O|1|2b|U|1369
6I7O|1|2b|U|1370
6I7O|1|2b|A|1371
6I7O|1|2b|U|1372
6I7O|1|2b|C|1373

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Fb

40S ribosomal protein S16-A

Chain Ib

40S ribosomal protein S19-A

Chain Jb

40S ribosomal protein S20