IL_6I7O_480

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6I7O|1|BQ|U|1820, 6I7O|1|BQ|U|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_480 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.2338

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

6I7O|1|BQ|G|1623
6I7O|1|BQ|G|1624
*
6I7O|1|BQ|U|1819
6I7O|1|BQ|U|1820
6I7O|1|BQ|U|1821
6I7O|1|BQ|C|1822

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BN

60S ribosomal protein L34-A