IL_6I7O_483

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_483 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.113

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6I7O|1|BQ|G|2823
6I7O|1|BQ|G|2824
6I7O|1|BQ|C|2825
6I7O|1|BQ|U|2826
*
6I7O|1|BQ|G|2863
6I7O|1|BQ|A|2864
6I7O|1|BQ|U|2865
6I7O|1|BQ|U|2866
6I7O|1|BQ|C|2867

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BA

60S ribosomal protein L3

Chain BD

60S ribosomal protein L10