IL_6I7O_488

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

6I7O|1|YQ|U|1015, 6I7O|1|YQ|C|1016, 6I7O|1|YQ|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_488 not in the Motif Atlas

Homologous match to IL_8C3A_046

Geometric discrepancy: 0.5718

The information below is about IL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53206.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|YQ|G|1013
6I7O|1|YQ|U|1014
6I7O|1|YQ|U|1015
6I7O|1|YQ|C|1016
6I7O|1|YQ|C|1017
6I7O|1|YQ|G|1018
*
6I7O|1|YQ|U|1034
6I7O|1|YQ|G|1035
6I7O|1|YQ|A|1036
6I7O|1|YQ|C|1037

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XG

60S ribosomal protein L11-B

Chain YI

60S ribosomal protein L5

Chain nb

Transfer RNA; tRNA