IL_6I7O_489

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

6I7O|1|YQ|A|1075

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_489 not in the Motif Atlas

Geometric match to IL_8VTW_096

Geometric discrepancy: 0.3096

The information below is about IL_8VTW_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6I7O|1|YQ|U|1073
6I7O|1|YQ|U|1074
6I7O|1|YQ|A|1075
6I7O|1|YQ|C|1076
*
6I7O|1|YQ|G|1083
6I7O|1|YQ|A|1084
6I7O|1|YQ|A|1085

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YI

60S ribosomal protein L5

Chain YJ

60S ribosomal protein L21-A