IL_6I7O_490

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6I7O|1|YQ|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_490 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1314

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6I7O|1|YQ|U|1501
6I7O|1|YQ|C|1502
6I7O|1|YQ|A|1503
6I7O|1|YQ|A|1504
6I7O|1|YQ|C|1505
*
6I7O|1|YQ|G|1513
6I7O|1|YQ|G|1514
6I7O|1|YQ|A|1515

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XL

60S ribosomal protein L39

Chain XX

60S ribosomal protein L17-A

Chain YF

60S ribosomal protein L19-A