IL_6I7V_087

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6I7V|1|BA|A|532, 6I7V|1|BA|U|534, 6I7V|1|BA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_087 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2923

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6I7V|1|BA|G|515
6I7V|1|BA|U|516
6I7V|1|BA|G|517
6I7V|1|BA|C|518
6I7V|1|BA|C|519
6I7V|1|BA|A|520
6I7V|1|BA|G|521
*
6I7V|1|BA|C|528
6I7V|1|BA|G|529
6I7V|1|BA|G|530
6I7V|1|BA|U|531
6I7V|1|BA|A|532
6I7V|1|BA|A|533
6I7V|1|BA|U|534
6I7V|1|BA|A|535
6I7V|1|BA|C|536

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12