IL_6I9R_051

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I9R_051 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2135

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6I9R|1|A|C|3119
6I9R|1|A|C|3120
6I9R|1|A|C|3121
6I9R|1|A|U|3122
6I9R|1|A|G|3123
6I9R|1|A|U|3124
6I9R|1|A|A|3125
6I9R|1|A|C|3126
*
6I9R|1|A|G|3131
6I9R|1|A|G|3132
6I9R|1|A|A|3133
6I9R|1|A|C|3134
6I9R|1|A|A|3135
6I9R|1|A|A|3136
6I9R|1|A|G|3137

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial