IL_6IP5_073
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCG*CG
- Length
- 5 nucleotides
- Bulged bases
- 6IP5|1|1A|C|1921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_073 not in the Motif Atlas
- Geometric match to IL_4V88_384
- Geometric discrepancy: 0.3848
- The information below is about IL_4V88_384
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
6IP5|1|1A|C|1920
6IP5|1|1A|C|1921
6IP5|1|1A|G|1922
*
6IP5|1|1A|C|2062
6IP5|1|1A|G|2063
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 2A
- 60S ribosomal protein L7
- Chain 2G
- 60S ribosomal protein L14
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2M
- 60S ribosomal protein L18a
- Chain 2Z
- 60S ribosomal protein L35a
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