IL_6IP5_079
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 6IP5|1|1A|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_079 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.1299
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6IP5|1|1A|C|2290
6IP5|1|1A|G|2291
6IP5|1|1A|C|2292
*
6IP5|1|1A|G|2342
6IP5|1|1A|G|2343
6IP5|1|1A|U|2344
6IP5|1|1A|G|2345
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 1F
- 60S ribosomal protein L4
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2Y
- 60S ribosomal protein L32
- Chain 2k
- 60S ribosomal protein L28
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