IL_6IP5_097

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAA*UCC

Length

8 nucleotides

Bulged bases

6IP5|1|1A|G|2848

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_097 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.3814

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6IP5|1|1A|G|2846
6IP5|1|1A|G|2847
6IP5|1|1A|G|2848
6IP5|1|1A|A|2849
6IP5|1|1A|A|2850
*
6IP5|1|1A|U|3840
6IP5|1|1A|C|3841
6IP5|1|1A|C|3842

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2P

60S ribosomal protein L23

Chain 2Q

60S ribosomal protein L24