IL_6IP5_098

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6IP5|1|1A|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_098 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.2684

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6IP5|1|1A|A|2850
6IP5|1|1A|G|2851
6IP5|1|1A|U|2852
6IP5|1|1A|C|2853
6IP5|1|1A|G|2854
6IP5|1|1A|G|2855
*
6IP5|1|1A|C|3837
6IP5|1|1A|U|3838
6IP5|1|1A|G|3839
6IP5|1|1A|U|3840

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2P

60S ribosomal protein L23