IL_6IP5_165
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6IP5|1|2m|C|65, 6IP5|1|2m|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP5_165 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.2348
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP5|1|2m|U|63
6IP5|1|2m|A|64
6IP5|1|2m|C|65
6IP5|1|2m|G|66
6IP5|1|2m|C|67
6IP5|1|2m|A|68
*
6IP5|1|2m|U|81
6IP5|1|2m|G|82
6IP5|1|2m|A|83
6IP5|1|2m|A|84
6IP5|1|2m|A|85
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 3H
- 40S ribosomal protein S6
- Chain 3N
- 40S ribosomal protein S24
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