IL_6IP5_167

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_167 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2309

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6IP5|1|2m|U|110
6IP5|1|2m|A|111
6IP5|1|2m|U|112
*
6IP5|1|2m|A|349
6IP5|1|2m|C|350
6IP5|1|2m|G|351

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11