IL_6IP5_203

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6IP5|1|2m|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_203 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.2118

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6IP5|1|2m|G|952
6IP5|1|2m|C|953
6IP5|1|2m|U|954
6IP5|1|2m|A|955
6IP5|1|2m|G|956
*
6IP5|1|2m|C|967
6IP5|1|2m|U|968
6IP5|1|2m|U|969
6IP5|1|2m|G|970
6IP5|1|2m|G|971
6IP5|1|2m|A|972
6IP5|1|2m|C|973
6IP5|1|2m|C|974

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2o

40S ribosomal protein S3a

Chain 3L

40S ribosomal protein S14