IL_6IP5_256

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAGUAUGG*CUGAAACU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP5_256 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.3924

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6IP5|1|2m|G|1167
6IP5|1|2m|G|1168
6IP5|1|2m|G|1169
6IP5|1|2m|A|1170
6IP5|1|2m|G|1171
6IP5|1|2m|U|1172
6IP5|1|2m|A|1173
6IP5|1|2m|U|1174
6IP5|1|2m|G|1175
6IP5|1|2m|G|1176
*
6IP5|1|2m|C|1185
6IP5|1|2m|U|1186
6IP5|1|2m|G|1187
6IP5|1|2m|A|1188
6IP5|1|2m|A|1189
6IP5|1|2m|A|1190
6IP5|1|2m|C|1191
6IP5|1|2m|U|1192

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

60S ribosomal protein L41

Chain 3B

40S ribosomal protein S23