IL_6IP6_003

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_003 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1287

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6IP6|1|1A|G|16
6IP6|1|1A|A|17
6IP6|1|1A|C|18
*
6IP6|1|1C|G|139
6IP6|1|1C|C|140
6IP6|1|1C|C|141

Current chains

Chain 1A

28S ribosomal RNA

Chain 1C

5.8S ribosomal RNA

Nearby chains

Chain 2H

60S ribosomal protein L15

Chain 2R

60S ribosomal protein L23a

Chain 2b

60S ribosomal protein L35