IL_6IP6_010

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_010 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.332

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6IP6|1|1A|C|180
6IP6|1|1A|C|181
6IP6|1|1A|G|182
*
6IP6|1|1A|C|255
6IP6|1|1A|G|256

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13

Chain 2b

60S ribosomal protein L35