IL_6IP6_026

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGCCCGG*UCC

Length

10 nucleotides

Bulged bases

6IP6|1|1A|C|501, 6IP6|1|1A|C|502, 6IP6|1|1A|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_026 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.3104

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6IP6|1|1A|G|499
6IP6|1|1A|G|500
6IP6|1|1A|C|501
6IP6|1|1A|C|502
6IP6|1|1A|C|503
6IP6|1|1A|G|504
6IP6|1|1A|G|505
*
6IP6|1|1A|U|653
6IP6|1|1A|C|654
6IP6|1|1A|C|655

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2K

60S ribosomal protein L18