IL_6IP6_045

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_045 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.319

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6IP6|1|1A|G|1425
6IP6|1|1A|G|1426
6IP6|1|1A|A|1427
6IP6|1|1A|U|1428
6IP6|1|1A|C|1429
*
6IP6|1|1A|G|1455
6IP6|1|1A|C|1456
6IP6|1|1A|G|1457
6IP6|1|1A|C|1458
6IP6|1|1A|A|1459
6IP6|1|1A|C|1460

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2K

60S ribosomal protein L18

Chain 2V

60S ribosomal protein L29