IL_6IP6_076
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6IP6|1|1A|C|1935, 6IP6|1|1A|G|1940, 6IP6|1|1A|A|2041, 6IP6|1|1A|U|2044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_076 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1951
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6IP6|1|1A|G|1933
6IP6|1|1A|A|1934
6IP6|1|1A|C|1935
6IP6|1|1A|C|1936
6IP6|1|1A|C|1937
6IP6|1|1A|C|1938
6IP6|1|1A|A|1939
6IP6|1|1A|G|1940
6IP6|1|1A|A|1941
6IP6|1|1A|A|1942
6IP6|1|1A|A|1943
6IP6|1|1A|A|1944
*
6IP6|1|1A|U|2038
6IP6|1|1A|G|2039
6IP6|1|1A|A|2040
6IP6|1|1A|A|2041
6IP6|1|1A|A|2042
6IP6|1|1A|A|2043
6IP6|1|1A|U|2044
6IP6|1|1A|G|2045
6IP6|1|1A|G|2046
6IP6|1|1A|A|2047
6IP6|1|1A|U|2048
6IP6|1|1A|G|2049
6IP6|1|1A|G|2050
6IP6|1|1A|C|2051
6IP6|1|1A|G|2052
6IP6|1|1A|C|2053
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1E
- 60S ribosomal protein L3
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2Z
- 60S ribosomal protein L35a
- Chain 2g
- Ubiquitin-60S ribosomal protein L40
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