IL_6IP6_089
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGAGUGG*CGCC
- Length
- 11 nucleotides
- Bulged bases
- 6IP6|1|1A|G|2546
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_089 not in the Motif Atlas
- Geometric match to IL_5J7L_033
- Geometric discrepancy: 0.356
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6IP6|1|1A|G|2541
6IP6|1|1A|G|2542
6IP6|1|1A|A|2543
6IP6|1|1A|G|2544
6IP6|1|1A|U|2545
6IP6|1|1A|G|2546
6IP6|1|1A|G|2547
*
6IP6|1|1A|C|2772
6IP6|1|1A|G|2773
6IP6|1|1A|C|2774
6IP6|1|1A|C|2775
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2a
- 60S ribosomal protein L34
- Chain 2e
- 60S ribosomal protein L38
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