IL_6IP6_114
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGA*UACCA
- Length
- 8 nucleotides
- Bulged bases
- 6IP6|1|1A|A|4385
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_114 not in the Motif Atlas
- Geometric match to IL_5Z1I_003
- Geometric discrepancy: 0.1803
- The information below is about IL_5Z1I_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6IP6|1|1A|U|3915
6IP6|1|1A|G|3916
6IP6|1|1A|A|3917
*
6IP6|1|1A|U|4384
6IP6|1|1A|A|4385
6IP6|1|1A|C|4386
6IP6|1|1A|C|4387
6IP6|1|1A|A|4388
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 1F
- 60S ribosomal protein L4
- Chain zx
- nascent peptide
- Chain zy
- Transfer RNA; tRNA
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