IL_6IP6_118
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_118 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.2071
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6IP6|1|1A|C|4243
6IP6|1|1A|A|4244
6IP6|1|1A|G|4245
*
6IP6|1|1A|C|4263
6IP6|1|1A|G|4264
6IP6|1|1A|U|4265
6IP6|1|1A|G|4266
6IP6|1|1A|G|4267
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 60S ribosomal protein L5
- Chain 2E
- 60S ribosomal protein L11
- Chain 2N
- 60S ribosomal protein L21
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