IL_6IP6_138

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

6IP6|1|1A|A|4656, 6IP6|1|1A|U|4657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_138 not in the Motif Atlas

Geometric match to IL_4WF9_103

Geometric discrepancy: 0.23

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6IP6|1|1A|U|4641
6IP6|1|1A|U|4642
*
6IP6|1|1A|A|4655
6IP6|1|1A|A|4656
6IP6|1|1A|U|4657
6IP6|1|1A|G|4658

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2X

60S ribosomal protein L31