IL_6IP6_139
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GAUUAU*AGAAUCC
- Length
- 13 nucleotides
- Bulged bases
- 6IP6|1|1A|A|4708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_139 not in the Motif Atlas
- Geometric match to IL_4QLM_002
- Geometric discrepancy: 0.3711
- The information below is about IL_4QLM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6IP6|1|1A|G|4680
6IP6|1|1A|A|4681
6IP6|1|1A|U|4682
6IP6|1|1A|U|4683
6IP6|1|1A|A|4684
6IP6|1|1A|U|4685
*
6IP6|1|1A|A|4705
6IP6|1|1A|G|4706
6IP6|1|1A|A|4707
6IP6|1|1A|A|4708
6IP6|1|1A|U|4709
6IP6|1|1A|C|4710
6IP6|1|1A|C|4711
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2C
- 60S ribosomal protein L9
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2g
- Ubiquitin-60S ribosomal protein L40
Coloring options: