IL_6IP6_141

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAGC*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_141 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3341

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6IP6|1|1A|G|4742
6IP6|1|1A|G|4743
6IP6|1|1A|A|4744
6IP6|1|1A|G|4745
6IP6|1|1A|C|4746
*
6IP6|1|1A|G|4953
6IP6|1|1A|G|4954
6IP6|1|1A|A|4955
6IP6|1|1A|A|4956
6IP6|1|1A|C|4957

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2Z

60S ribosomal protein L35a