IL_6IP6_157

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6IP6|1|1B|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_157 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.1937

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6IP6|1|1B|G|82
6IP6|1|1B|A|83
6IP6|1|1B|U|84
6IP6|1|1B|G|85
*
6IP6|1|1B|C|92
6IP6|1|1B|G|93
6IP6|1|1B|C|94

Current chains

Chain 1B

5S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2A

60S ribosomal protein L7

Chain 2D

60S ribosomal protein L10-like

Chain 2M

60S ribosomal protein L18a