IL_6IP6_166
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6IP6|1|2m|C|65, 6IP6|1|2m|C|67
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_166 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.2318
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP6|1|2m|U|63
6IP6|1|2m|A|64
6IP6|1|2m|C|65
6IP6|1|2m|G|66
6IP6|1|2m|C|67
6IP6|1|2m|A|68
*
6IP6|1|2m|U|81
6IP6|1|2m|G|82
6IP6|1|2m|A|83
6IP6|1|2m|A|84
6IP6|1|2m|A|85
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 3H
- 40S ribosomal protein S6
- Chain 3N
- 40S ribosomal protein S24
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