IL_6IP6_171
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6IP6|1|2m|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_171 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1608
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6IP6|1|2m|G|145
6IP6|1|2m|G|146
6IP6|1|2m|A|147
6IP6|1|2m|U|148
6IP6|1|2m|A|149
6IP6|1|2m|A|150
6IP6|1|2m|C|151
*
6IP6|1|2m|G|167
6IP6|1|2m|C|168
6IP6|1|2m|U|169
6IP6|1|2m|A|170
6IP6|1|2m|A|171
6IP6|1|2m|U|172
6IP6|1|2m|A|173
6IP6|1|2m|C|174
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2Q
- 60S ribosomal protein L24
- Chain 3H
- 40S ribosomal protein S6
- Chain 3N
- 40S ribosomal protein S24
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