IL_6IP6_178

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6IP6|1|2m|U|428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_178 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1673

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6IP6|1|2m|G|411
6IP6|1|2m|G|412
6IP6|1|2m|G|413
*
6IP6|1|2m|C|424
6IP6|1|2m|G|425
6IP6|1|2m|A|426
6IP6|1|2m|U|427
6IP6|1|2m|U|428
6IP6|1|2m|C|429

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3B

40S ribosomal protein S23

Chain 3I

40S ribosomal protein S9