IL_6IP6_194
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP6_194 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.4002
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6IP6|1|2m|G|807
6IP6|1|2m|A|808
6IP6|1|2m|A|809
6IP6|1|2m|A|810
6IP6|1|2m|A|811
6IP6|1|2m|A|812
6IP6|1|2m|A|813
6IP6|1|2m|U|814
6IP6|1|2m|U|815
*
6IP6|1|2m|A|849
6IP6|1|2m|C|850
6IP6|1|2m|C|851
6IP6|1|2m|G|852
6IP6|1|2m|C|853
6IP6|1|2m|A|854
6IP6|1|2m|G|855
6IP6|1|2m|C|856
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2q
- 40S ribosomal protein S4, X isoform
- Chain 2v
- 40S ribosomal protein S11
- Chain 3I
- 40S ribosomal protein S9
- Chain 3M
- 40S ribosomal protein S15a
Coloring options: