IL_6IP6_198

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6IP6|1|2m|U|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_198 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2052

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6IP6|1|2m|G|925
6IP6|1|2m|A|926
6IP6|1|2m|C|927
*
6IP6|1|2m|G|1014
6IP6|1|2m|U|1015
6IP6|1|2m|U|1016
6IP6|1|2m|U|1017

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3K

40S ribosomal protein S13

Chain 3M

40S ribosomal protein S15a

Chain 3P

40S ribosomal protein S27