IL_6IP6_215

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_215 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2072

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6IP6|1|2m|G|1270
6IP6|1|2m|C|1271
6IP6|1|2m|C|1272
*
6IP6|1|2m|G|1510
6IP6|1|2m|U|1511
6IP6|1|2m|C|1512

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2u

40S ribosomal protein S10

Chain 3E

40S ribosomal protein S29

Chain 3R

Ubiquitin-40S ribosomal protein S27a