IL_6IP6_229

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6IP6|1|2m|C|1701, 6IP6|1|2m|A|1835

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_229 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2307

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6IP6|1|2m|C|1700
6IP6|1|2m|C|1701
6IP6|1|2m|G|1702
*
6IP6|1|2m|C|1833
6IP6|1|2m|A|1834
6IP6|1|2m|A|1835
6IP6|1|2m|G|1836

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3C

40S ribosomal protein S26

Chain zv

mRNA

Chain zy

Transfer RNA; tRNA