IL_6IP6_239

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP6_239 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2191

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6IP6|1|2m|C|1742
6IP6|1|2m|G|1743
6IP6|1|2m|G|1744
6IP6|1|2m|A|1745
6IP6|1|2m|U|1746
*
6IP6|1|2m|A|1788
6IP6|1|2m|G|1789
6IP6|1|2m|A|1790
6IP6|1|2m|A|1791
6IP6|1|2m|G|1792

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 2t

40S ribosomal protein S8

Chain 3H

40S ribosomal protein S6