IL_6IP8_005
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_005 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.1625
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP8|1|1A|C|81
6IP8|1|1A|U|82
6IP8|1|1A|C|83
6IP8|1|1A|A|84
6IP8|1|1A|G|85
6IP8|1|1A|U|86
6IP8|1|1A|A|87
6IP8|1|1A|A|88
*
6IP8|1|1A|U|96
6IP8|1|1A|G|97
6IP8|1|1A|A|98
6IP8|1|1A|A|99
6IP8|1|1A|C|100
6IP8|1|1A|A|101
6IP8|1|1A|G|102
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2K
- 60S ribosomal protein L18
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2i
- 60S ribosomal protein L36a
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