IL_6IP8_025
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGCCCGG*UCC
- Length
- 10 nucleotides
- Bulged bases
- 6IP8|1|1A|C|501, 6IP8|1|1A|C|502, 6IP8|1|1A|C|503
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_025 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.298
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6IP8|1|1A|G|499
6IP8|1|1A|G|500
6IP8|1|1A|C|501
6IP8|1|1A|C|502
6IP8|1|1A|C|503
6IP8|1|1A|G|504
6IP8|1|1A|G|505
*
6IP8|1|1A|U|653
6IP8|1|1A|C|654
6IP8|1|1A|C|655
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2K
- 60S ribosomal protein L18
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