IL_6IP8_063
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6IP8|1|1A|G|1741, 6IP8|1|1A|A|1787, 6IP8|1|1A|A|1788
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_063 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.1545
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6IP8|1|1A|G|1739
6IP8|1|1A|C|1740
6IP8|1|1A|G|1741
6IP8|1|1A|A|1742
6IP8|1|1A|A|1743
6IP8|1|1A|U|1744
*
6IP8|1|1A|A|1786
6IP8|1|1A|A|1787
6IP8|1|1A|A|1788
6IP8|1|1A|C|1789
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 60S ribosomal protein L5
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2N
- 60S ribosomal protein L21
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